Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015938023.1_cds_XP_016483045.1_74201
CDS Infomation

[gene=LOC107803785] [db_xref=GeneID:107803785] [protein=helicase-like transcription factor CHR28 isoform X5] [protein_id=XP_016483045.1] [location=join(24644..24761,24841..24969,25050..25423,26144..26215,26319..26396,26493..27396,27913..28043,29502..29723,31908..32447,36594..36803,37202..37306)] [gbkey=CDS]
Sequence

ATGGATGCAATTAGTATCTCTTCGGATGATTCGGATTTGCGTGAAATAGACAACTACAAA
GATGATTCACCTCTCAGGGATTCTGCCAGTTCTCGAATCCTTCCACCATGGGGAACAGAT
AGCTCGTCCAAAAGAACAATTTATCCTAATGGAAGCTCCTCCAACTATCATAATATTACT
GATGACAGTGGACCATCAAGTTCACGAGCAAGTAGAGACGGGAATTCCAAGTATTCTTCT
GGGAATGATAATGGAAAGCATTTTCCACAGCAAACTTTAAAGCGTACACTTCCAACATCT
TTTTATCCTTCTGGCTCAGTAGAGGATATAGGTTTCAGTCAGGCTCGTCAATCTCATGAA
AGATCATACCAATCTGCATGGGCAAGTTCGAGCAGTGCTGGTGATAACTACTGGAAAGAC
AGTTTCAACAGGGGCAACCATAGTGAGTTAGTTCTCTATGAAAATAAAGGAAACAGAGTG
TTACCTCCGTCTTTGATGCACAGAAGGTCCACTTCAGGTGTTCAACATATCAGTGTAAAT
GATCCCTTACATTACCCTGCGAAAGGTGAAGACAGAGCTGCAGCAGCTGATGAGAGACTG
ATCTTTCAAGCTGCTCTGCAGGATTTAAACCAACCTAAGGTAGAGGCTCGTCTGCCAGAT
GGTCTTTTGTCAGTTTCTCTCCTAAGACACCAGAGAATTGCTTTGGCGTGGACACTTCAA
AAAGAAACTGGTAGTGTTCATTGTTCGGGTGGTATTCTGGCTGATGATCAGGGTCTTGGT
AAGACTATTTCAATGATTGCCCTCATACAGATGCAGAGGTCAGCTCAGGATAAGTCTAAA
GAGAAAGATCTGGATGATATTAAAGCTGAAGCCTTGAATTTGGATGATGATGATGAAAAT
GTTGCTCCTGCTTCTCAGGAATTAAAACAGCGTAGAGAGACAGATGGTGTCGAGGTGATT
CCAGATGCAAGAACTTCTATAAAGGGGTTTCGTCGTAGGAGGCCAGCAGCTGGTACTTTG
GTAGTTTGCCCAGCAAGTGTTCTTCGACAATGGGCTCGGGAACTGGATGAGAAAGTTACG
GATGAAGCAAGTCTATCTATTTTAATCTATCATGGAGGCAATAGGACTAAGGATCCGGTG
GAATTGGCAAAATATGACGTGGTTCTAACTACATATGCCATTGTGACAAATGAAGTTCCT
AAACAAGCTTTAGTTGAAGAGGATGACGATGACCAGAAAAATGGAGAACGATTCGGAATA
TCTTCTGACTTCAATTCAAGTAAGAAGCGGAAAAAGCCATCTCTTAATAAGAAGGGAAAA
AAAGGCAGAAAAGGATTTGATGCAGATGACTTTGATCCTAATTGTGGTGGTCTTGCCAAA
GTCAGTTGGTTTAGGGTGATTTTAGATGAAGCCCAGACAATAAAGAATCATAGAACACAA
GTAGCTAGAGCATGCTGCAGCCTCAGAGCAAAACGAAGGTGGTGCTTATCTGGAACACCG
ATACAAAATGCCATTGATGAGTTATTCAGCTACTTCAGATTTCTGAGATATGACCCCTAT
GCTGAATATAAATCATTTTGCAGCCAAATTAAGTTTCCAATAGCTATAAACTCAATTAAT
GGGTATAAAAAGCTTCAAGCGATTTTGAGGGCCATAATGTTGCGACGAACAAAAGGTACA
CTGATTGACGGTGAGCCAATTATAACCTTACCACCAAAAACTATACAGTTGAAGAAGGTG
GCTTTCTCTGCCGAGGAACGCGCTTTCTATAACAAATTAGAAGCTGAATCGCGATCGCAG
TTTAAGGCATATGCTGCAGCTGGAACTGTGAAGCAAAACTATGCAAATATCTTATTGATG
CTTCTACGACTTCGGCAGGCTTGTGACCACCCAAAACTTGTCAAAAGGGAGAGTTACAAT
TCTGTTGGAAGAGCTTCATCAGAGATGGCGAGGAAACTCCCAAAGAAAATGGTGGAGGAT
CTCTTGCAACAATTGGAAACTTCATTGGTAACATGTTCTGTATGCGATGATGTGCCCGAA
GATGCAGTTGTCTCCATGTGTGAACATGTGTTCTGCTATCAATGTGTATCAGATTATTTA
ACTGGGGAAGATAATACATGTCCGGCACTTGGATGCAAAGAGCAACTTGGTCCTGAGGCT
GTATATTCTAAAGCTACCCTAAAAACTTGTGTATCAGATGGTGTAAATGGTGATCCTTCC
AGCTTGTCTGAATTTGATGAGAAATCCATCATGGAAAATGAGTACATTTCTTCTAAAATA
AAAGCTGCTCTTGAAATTCTTCACTCATGTTCTAAGTCAAAGGGTCCTTATTTAGAATCA
GATATCTTGGTTCAATGCAATGGCGATTCGTCAAATTTGGGAAAAGCAGATTCAGAATCG
CAAGACAAGGGGCCAATAAAGGCCATTATCTTCTCTCAGTGGACAGGCATGTTAAACTTG
GTTGAGCGTGCTTTGAACCAGTCTTGTTTTCGGTATGAGAGGCTTGATGGTACAATGTCT
CTTGCTGCTAGAGACAGGGCTGTCAAAGAGTTCAACACAAATCCTGAGGTGACTGTCATG
TTGATGTCACTAAAGGCTGGAAATCTTGGCCTAAATATGGTGGCAGCTTGTCACGTAATT
CTTCTTGACCTTTGGTGGAATCCAACTACTGAAGATCAGGCTATTGATCGAGCTCACAGA
ATAGGACAAACTCGTGCGGTCACTGTGTCTCGATTAACAATTGAAGGCACAGTTGAAGAT
CGAATTCTAGCTCTCCAGGAGGACAAAAGAAATATGGTTGCATCCGCTTTTGGTGAAGAT
CAAAGTGGAGGCACAGCTAGTCGACTAACTGTAGAAGATCTTAGATATCTCTTTAATCTC
TAA

Peptide Sequence

PEP ID

XP_016483045.1
PEP Infomation

PREDICTED: helicase-like transcription factor CHR28 isoform X5 [Nicotiana tabacum]
Sequence

MDAISISSDDSDLREIDNYKDDSPLRDSASSRILPPWGTDSSSKRTIYPNGSSSNYHNIT
DDSGPSSSRASRDGNSKYSSGNDNGKHFPQQTLKRTLPTSFYPSGSVEDIGFSQARQSHE
RSYQSAWASSSSAGDNYWKDSFNRGNHSELVLYENKGNRVLPPSLMHRRSTSGVQHISVN
DPLHYPAKGEDRAAAADERLIFQAALQDLNQPKVEARLPDGLLSVSLLRHQRIALAWTLQ
KETGSVHCSGGILADDQGLGKTISMIALIQMQRSAQDKSKEKDLDDIKAEALNLDDDDEN
VAPASQELKQRRETDGVEVIPDARTSIKGFRRRRPAAGTLVVCPASVLRQWARELDEKVT
DEASLSILIYHGGNRTKDPVELAKYDVVLTTYAIVTNEVPKQALVEEDDDDQKNGERFGI
SSDFNSSKKRKKPSLNKKGKKGRKGFDADDFDPNCGGLAKVSWFRVILDEAQTIKNHRTQ
VARACCSLRAKRRWCLSGTPIQNAIDELFSYFRFLRYDPYAEYKSFCSQIKFPIAINSIN
GYKKLQAILRAIMLRRTKGTLIDGEPIITLPPKTIQLKKVAFSAEERAFYNKLEAESRSQ
FKAYAAAGTVKQNYANILLMLLRLRQACDHPKLVKRESYNSVGRASSEMARKLPKKMVED
LLQQLETSLVTCSVCDDVPEDAVVSMCEHVFCYQCVSDYLTGEDNTCPALGCKEQLGPEA
VYSKATLKTCVSDGVNGDPSSLSEFDEKSIMENEYISSKIKAALEILHSCSKSKGPYLES
DILVQCNGDSSNLGKADSESQDKGPIKAIIFSQWTGMLNLVERALNQSCFRYERLDGTMS
LAARDRAVKEFNTNPEVTVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHR
IGQTRAVTVSRLTIEGTVEDRILALQEDKRNMVASAFGEDQSGGTASRLTVEDLRYLFNL

Transcript Sequence

Gene sequence data has not been registered.